Description
The IPSP-FTC dataset includes plant pathogenic fungi causing diseases on forest and urban trees. Fungi were isolated from plant material of various origin, and were characterized by their pathogenicity on plant species. The accessions are maintained in vitro on artificial substrates, in refrigerators at -4°C in glass tubes or at -20 °C in glycerol, or as spores and conidia on vegetal material. Strains are available for research purposes.
Data Records
The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 491 records.
3 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versions
The table below shows only published versions of the resource that are publicly accessible.
How to cite
Researchers should cite this work as follows:
Danti R, Della Rocca G, Secci S, Barberini S, Frascella A, Emiliani G (2023). Forest Tree Fungal Collection (CNR-IPSP-FTFC). Version 1.0. GBIF Secretariat. Occurrence dataset. https://www.gbif.org/dataset/
Rights
Researchers should respect the following rights statement:
The publisher and rights holder of this work is Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.
GBIF Registration
This resource has been registered with GBIF, and assigned the following GBIF UUID: 884829eb-8f00-4f85-8365-783759ea0f2c. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by DiSSCo.
Keywords
Occurrence; Fungi; Mycelium; Pathogens; Cankers; Tree diseases; Specimen
External data
The resource data is also available in other formats
| API JSON | https://biomemory.cnr.it/api/occurrences/json/?dataset=138 UTF-8 Darwin Core |
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Contacts
- Point Of Contact
- Curator and scientific responsible of the collection
- Via Madonna del Piano 10
https://orcid.org/0000-0002-2866-3688
- Originator
- Curator of the collection
- Via Madonna del Piano 10
- Originator
- Responsible for cultivation and preservation of plants and web database update
- Via Madonna del Piano 10
- Originator
- Responsible for molecular characterization and micropropagation
- Via Madonna del Piano 10
- Originator
- Molecular characterization and strain preservation
- Via Madonna del Piano 10
- Originator
- Molecular characterization and database responsible of collection
- Via Madonna del Piano 10
- Metadata Provider
- Senior Researcher
- v. Madonna del Piano 10
- Metadata Provider
- Senior Technologist
- v. F. De Blasio 5
- Point Of Contact
- Reference Person
- Via Madonna del Piano 10
- Content Provider
- Research Department
- p.le Aldo Moro 7
Geographic Coverage
Italy, Greece, United States of America, France, Algeria, Spain, Malta, Morocco, Portugal, Canada, Libya
| Bounding Coordinates | South West [-19, -180], North East [90, 180] |
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Taxonomic Coverage
Large variety of ascomycetous fungi, some basidiomycetes, characterized as pathogens of forest trees (Seiridium spp., Diplodia spp., Pestalotiopsis spp., Armillaria spp., Heterobasidion abietinum, Cryphonectria parasitica). A second core of collection is composed by 35 strains of Trichoderma spp. and Clonostachys rosea, characterized as Biocontrol Agents (BCA). Some basidiomycetes used for trials on mycelium-based biomaterial (Pleurotus ostreatus, Phomitopsis pinicola, Ganoderma lucidum, Trametes versicolor). One strain of the oomycetes Phytophthora cambivora and one of P. cinnamomi are also available.
| Kingdom | Fungi |
|---|---|
| Family | Pestalotiopsidaceae, Botryosphaeriaceae, Gnomoniaceae, Amphisphaeriaceae, Didymellaceae, Godroniaceae |
Temporal Coverage
| Formation Period | 1999-2014 |
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Project Data
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. The full digitization of the research collections currently offline will be achieved along with the reorganization, standardization and harmonization of the data and metadata currently available in the main online collections. All the taxonomic, genetic, geographical, ecological, physiological information for each specimen will be organized in an easily searchable platform supported by web-GIS functionalities. Reference to genetic/genomic data for each specimen will allow for the identification of the most interesting material for further genetic/genomic analysis. The availability of such huge amount of information on plant, animal, and microbial genetic resources will pave the way for the dissection of the morpho-physiological and molecular mechanisms of adaptation to climate change. BioMemory (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.
| Title | ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY |
|---|---|
| Identifier | PNRR Project IR0000032 | CNR SAC.AD002.173 |
| Funding | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BioMemory (CNR-DiSBA Project No. SAC.AD002.173 |
The personnel involved in the project:
Collection Data
| Collection Name | IPSP Forest Tree Fungal Collection (CNR-IPSP-FTFC) |
|---|---|
| Collection Identifier | 6635259a-e0c9-436e-af0f-7a4a62217bf9 |
| Specimen preservation methods | Deep frozen, Refrigerated, Glycerin, Other |
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Additional Metadata
Data and samples collected and analyzed within the following research projects: Partner of MIRRI Italian Node (http://www.mirri-it.it); involved in CNR BioGenRes (http://www.biogenres.cnr.it/); Life Mycorestore (LIFE18 CCA/IT/001110)
| Purpose | Plant Pathology, Biocontrol agents, Forestry |
|---|---|
| Maintenance Description | Cryo: Freezer at -20°C, in cryovials with spore suspension or with mycelium plug in water glycerol (50% v/V) or in pure water. Fresh cultures: Refrigerator at 4°C in agar slants with mycelium. |
| Alternative Identifiers | https://ipt.ibbr.cnr.it/ipt/resource?r=ipsp-ftfc |