Description
The IPSP-FTC dataset includes plant pathogenic fungi causing diseases on forest and urban trees. Fungi were isolated from plant material of various origin, and were characterized by their pathogenicity on plant species. The accessions are maintained in vitro on artificial substrates, in refrigerators at -4°C in glass tubes or at -20 °C in glycerol, or as spores and conidia on vegetal material. Strains are available for research purposes.
Enregistrements de données
Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 491 enregistrements.
3 tableurs de données d'extension existent également. Un enregistrement d'extension fournit des informations supplémentaires sur un enregistrement du cœur de standard (core). Le nombre d'enregistrements dans chaque tableur de données d'extension est illustré ci-dessous.
Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.
Versions
Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.
Comment citer
Les chercheurs doivent citer cette ressource comme suit:
Danti R, Della Rocca G, Secci S, Barberini S, Frascella A, Emiliani G (2023). Forest Tree Fungal Collection (CNR-IPSP-FTFC). Version 1.0. GBIF Secretariat. Occurrence dataset. https://www.gbif.org/dataset/
Droits
Les chercheurs doivent respecter la déclaration de droits suivante:
L’éditeur et détenteur des droits de cette ressource est Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Ce travail est sous licence Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0.
Enregistrement GBIF
Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : 884829eb-8f00-4f85-8365-783759ea0f2c. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du DiSSCo.
Mots-clé
Occurrence; Fungi; Mycelium; Pathogens; Cankers; Tree diseases; Specimen
Données externes
Les données de la ressource sont disponibles dans d'autres formats
| API JSON | https://biomemory.cnr.it/api/occurrences/json/?dataset=138 UTF-8 Darwin Core |
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Contacts
- Personne De Contact
- Curator and scientific responsible of the collection
- Via Madonna del Piano 10
https://orcid.org/0000-0002-2866-3688
- Créateur
- Curator of the collection
- Via Madonna del Piano 10
- Créateur
- Responsible for cultivation and preservation of plants and web database update
- Via Madonna del Piano 10
- Créateur
- Responsible for molecular characterization and micropropagation
- Via Madonna del Piano 10
- Créateur
- Molecular characterization and strain preservation
- Via Madonna del Piano 10
- Créateur
- Molecular characterization and database responsible of collection
- Via Madonna del Piano 10
- Fournisseur Des Métadonnées
- Senior Researcher
- v. Madonna del Piano 10
- Fournisseur Des Métadonnées
- Senior Technologist
- v. F. De Blasio 5
- Personne De Contact
- Reference Person
- Via Madonna del Piano 10
- Fournisseur De Contenu
- Research Department
- p.le Aldo Moro 7
Couverture géographique
Italy, Greece, United States of America, France, Algeria, Spain, Malta, Morocco, Portugal, Canada, Libya
| Enveloppe géographique | Sud Ouest [-19, -180], Nord Est [90, 180] |
|---|
Couverture taxonomique
Large variety of ascomycetous fungi, some basidiomycetes, characterized as pathogens of forest trees (Seiridium spp., Diplodia spp., Pestalotiopsis spp., Armillaria spp., Heterobasidion abietinum, Cryphonectria parasitica). A second core of collection is composed by 35 strains of Trichoderma spp. and Clonostachys rosea, characterized as Biocontrol Agents (BCA). Some basidiomycetes used for trials on mycelium-based biomaterial (Pleurotus ostreatus, Phomitopsis pinicola, Ganoderma lucidum, Trametes versicolor). One strain of the oomycetes Phytophthora cambivora and one of P. cinnamomi are also available.
| Kingdom | Fungi |
|---|---|
| Family | Pestalotiopsidaceae, Botryosphaeriaceae, Gnomoniaceae, Amphisphaeriaceae, Didymellaceae, Godroniaceae |
Couverture temporelle
| Epoque de formation | 1999-2014 |
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Données sur le projet
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. The full digitization of the research collections currently offline will be achieved along with the reorganization, standardization and harmonization of the data and metadata currently available in the main online collections. All the taxonomic, genetic, geographical, ecological, physiological information for each specimen will be organized in an easily searchable platform supported by web-GIS functionalities. Reference to genetic/genomic data for each specimen will allow for the identification of the most interesting material for further genetic/genomic analysis. The availability of such huge amount of information on plant, animal, and microbial genetic resources will pave the way for the dissection of the morpho-physiological and molecular mechanisms of adaptation to climate change. BioMemory (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.
| Titre | ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY |
|---|---|
| Identifiant | PNRR Project IR0000032 | CNR SAC.AD002.173 |
| Financement | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BioMemory (CNR-DiSBA Project No. SAC.AD002.173 |
Les personnes impliquées dans le projet:
Données de collection
| Nom de la collection | IPSP Forest Tree Fungal Collection (CNR-IPSP-FTFC) |
|---|---|
| Identifiant de collection | 6635259a-e0c9-436e-af0f-7a4a62217bf9 |
| Méthode de conservation des spécimens | Deep frozen, Refrigerated, Glycerin, Other |
|---|
Métadonnées additionnelles
Data and samples collected and analyzed within the following research projects: Partner of MIRRI Italian Node (http://www.mirri-it.it); involved in CNR BioGenRes (http://www.biogenres.cnr.it/); Life Mycorestore (LIFE18 CCA/IT/001110)
| Objet | Plant Pathology, Biocontrol agents, Forestry |
|---|---|
| Description de la fréquence de mise à jour | Cryo: Freezer at -20°C, in cryovials with spore suspension or with mycelium plug in water glycerol (50% v/V) or in pure water. Fresh cultures: Refrigerator at 4°C in agar slants with mycelium. |
| Identifiants alternatifs | https://ipt.ibbr.cnr.it/ipt/resource?r=ipsp-ftfc |