Quercus cerris populations from Central-Eastern Europe and Middle East (IBBR-QUERCUS-CERRIS)

Occurrence
Latest version published by Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) on Feb 18, 2025 Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR)

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 1,175 records in English (279 KB) - Update frequency: as needed
Metadata as an EML file download in English (24 KB)
Metadata as an RTF file download in English (13 KB)

Description

A total of 192 populations of Quercus cerris from the eastern Mediterranean Basin (Italy, Balkan peninsula, Anatolia) were genotyped with six polymorphic chloroplast microsatellites, and the genetic diversity and differentiation of the populations were evaluated. DNA samples are kept in collection at -20° C and available for research use only.

Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 1,175 records.

2 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.

Occurrence (core)
1175
Amplification 
7050
Preservation 
1175

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Bagnoli F, Spanu I, Avanzi C, Vendramin GG, Piotti A (2024). Quercus cerris populations from Central-Eastern Europe and Middle East (IBBR-QUERCUS-CERRIS). Institute of Biosciences and Bioresources (IBBR), National Research Council of Italy (CNR). Occurrence dataset v.1.2. - doi: https://doi.org/10.15468/qwefvq

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 3a80944e-06ce-4226-ac9f-052ff0dcbd97.  Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by DiSSCo.

Keywords

Occurrence; Specimen; Quercus cerris L.; Turkey oaks; Intraspecific biodiversity; Range-wide genetic variability; Forest tree populations

External data

The resource data is also available in other formats

Contacts

Francesca Bagnoli
  • Originator
  • Point Of Contact
  • Researcher
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
  • v. Madonna del Piano 10
I-50019 Sesto Fiorentino
FI
IT
Ilaria Spanu
  • Originator
  • Researcher
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
  • v. Madonna del Piano 10
I-50019 Sesto Fiorentino
FI
IT
Camilla Avanzi
  • Originator
  • Researcher
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
  • v. Madonna del Piano 10
I-50019 Sesto Fiorentino
FI
IT
Giovanni Giuseppe Vendramin
  • Originator
  • Research Director
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
  • v. Madonna del Piano 10
I-50019 Sesto Fiorentino
FI
IT
Andrea Piotti
  • Originator
  • Researcher
CNR-IBBR-FI, Institute of Biosciences and Bioresources (IBBR) - Section of Sesto Fiorentino, National Research Council of Italy
  • v. Madonna del Piano 10
I-50019 Sesto Fiorentino
FI
IT
Gabriele Bucci
  • Metadata Provider
  • Senior Researcher
CNR-IBBR, Institute of Biosciences and BioResources, National Research Council of Italy
  • v. Madonna del Piano 10
I-50019 Sesto Fiorentino
FI
IT
Massimo Ianigro
  • Metadata Provider
  • Senior Technologist
CNR-IRSA-BA, Water Research Institute (IRSA) - Section of Bari, National Research Council of Italy
  • v. F. De Blasio 5
I-70132 Bari
BA
IT
Institute of Biosciences and BioResources CNR-IBBR
  • Content Provider
  • Research Institute
National Research Council of Italy (CNR)
  • v. Madonna del Piano 10
I-50019 Sesto Fiorentino
FI
IT
Department of Bio-Agri-Food Sciences CNR-DiSBA
  • Publisher
National Research Council of Italy
IT-00100 Roma
RM
IT

Geographic Coverage

Central Europe, Eastern Europe, Balkan peninsula, Middle East (Italy, Hungary, Slovakia, Serbia, Turkey, Bulgaria, Macedonia, Albania, Croatia, Romania, Bosnia, Slovenia, Greece, Austria, Lebanon, Ukraine, Montenegro)

Bounding Coordinates South West [33.783, 8.636], North East [49.367, 37.4]

Taxonomic Coverage

Quercus cerris L., Turkey oak

Kingdom Plantae
Phylum Tracheophyta
Class Magnoliopsida
Order Fagales
Family Fagaceae

Temporal Coverage

Formation Period 2014-2016

Project Data

ITINERIS - Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity aims to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) that have been created and maintained through past and current research projects. || BioMemory (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project aims to create a network of biobanks (i.e., scientific research collections) where data and metadata associated with biological samples of different natures are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for many purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals, and plants.

Title ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY
Identifier PNRR Project IR0000032 | CNR SAC.AD002.173
Funding PNRR project IR0000032 - ITINERIS, Italian Integrated Environmental Research Infrastructures System - CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU - Next Generation EU - Mission 4 “Education and Research” - Component 2: “From research to business” - Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BioMemory (CNR-DiSBA Project No. SAC.AD002.173)
Project Award ITINERIS - Italian Integrated Environmental Research Infrastructures System
https://doi.org/10.13039/501100021856
Ministero dell'Università e della Ricerca
PNRR Project IR0000032
https://itineris.cnr.it

BioMemory Project (CNR-DiSBA)
https://doi.org/10.13039/501100004462
Consiglio Nazionale delle Ricerche
CNR-DiSBA no. SAC.AD002.173
https://www.disba.cnr.it/en/

The personnel involved in the project:

Eleonora Fornaro
Gabriele Bucci
Marina Tumolo
Massimo Ianigro
Giovanni Giuseppe Vendramin

Sampling Methods

Trees were randomly sampled from selected natural stands, with each population consisting of 42 to 50 individuals.

Study Extent Central and Eastern European populations of Quercus cerris L. have been considered, along with several populations from Turkey,

Method step description:

  1. None

Collection Data

Collection Name DNA and samples for genetic analyses on forest trees (CNR-IBBR-DNAFOR)
Collection Identifier 90a41989-9906-41d4-aff9-0dc8420c7a45
Specimen preservation methods Refrigerated

Bibliographic Citations

  1. Bagnoli, F., Tsuda, Y., Fineschi, S., Bruschi, P., Magri, D., Zhelev, P., Paule, L., Simeone, M.C., González-Martínez, S.C. and Vendramin, G.G. (2016), Combining molecular and fossil data to infer demographic history of Quercus cerris: insights on European eastern glacial refugia. J. Biogeogr., 43: 679-690. https://doi.org/10.1111/jbi.12673 https://doi.org/10.1111/jbi.12673
  2. Sebastiani, F., Carnevale, S. and Vendramin, G.G. (2004), A new set of mono- and dinucleotide chloroplast microsatellites in Fagaceae. Molecular Ecology Notes, 4: 259-261. https://doi.org/10.1111/j.1471-8286.2004.00635.x https://doi.org/10.1111/j.1471-8286.2004.00635.x

Additional Metadata

Population genetics, Infraspecific biodiversity, Phylogeography, Adaptation, Climate change

Purpose

The dataset includes more than 1,100 records of cryopreserved DNA and tissue samples of several forest tree species collected during past and current national and EU projects. The aim is to investigate the genetic makeup of their populations and assess their infraspecific biodiversity across Europe, from the biogeographical to the local level.

Maintenance Description Tissues and DNA are stored at -20 °C. Updates will be included when new samples are collected.
Alternative Identifiers 3a80944e-06ce-4226-ac9f-052ff0dcbd97
https://ipt.ibbr.cnr.it/ipt/resource?r=ibbr-quercus-cerris