說明
The dataset derives from the first large-scale analysis using nuclear molecular markers to assess the genetic diversity and structure of Cupressus sempervirens L. Genetic and fossil data were combined to infer the possible role of human activity and evolutionary history in shaping the diversity of cypress populations. Thirty populations with six polymorphic nuclear microsatellite markers were analyzed. Dramatic reductions in heterozygosity and allelic richness were observed from east to west across the species range. Structure analysis assigned individuals to two main groups separating the central Mediterranean and eastern populations. The two main groups could be further divided into five subgroups, which showed the following geographical distributions: Turkey with the Greek islands Rhodes and Samos, Greece (Crete), Southern Italy, Northern Italy, and Tunisia with Central Italy. This pattern of genetic structure is also supported by SAMOVA and Barrier analyses. Palaeobotanical data indicated that Cupressus was present in Italy in the Pliocene, Pleistocene, and Holocene.
Furthermore, the survey showed that Italian cypress populations experienced bottlenecks resulting in reduced genetic diversity, allelic richness, and higher genetic differentiation. Recent colonization or introduction may also have influenced levels of diversity detected in the Italian populations, as most individuals in this range today have multilocus genotypes also present in the eastern range of the species. The data reveal a new interpretation of the history of cypress distribution characterized by ancient eastern populations (Turkey and Greek islands) and a mosaic of recently introduced trees and remnants of ancient, depauperate populations in the central Mediterranean range.
資料紀錄
此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 712 筆紀錄。
亦存在 3 筆延伸集的資料表。延伸集中的紀錄補充核心集中紀錄的額外資訊。 每個延伸集資料表中資料筆數顯示如下。
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Bagnoli F, Vendramin GG, Buonamici A, Doulis G, Gonzalez-Martinez S, La Porta N, Magri D, Raddi P, Sebastiani F, Fineschi S (2024). Simple sequence repeats (SSRs) polymorphisms in Cupressus sempervirens (CNR-IBBR-DNAFOR). Version 1.0. GBIF Secretariat. Occurrence dataset. https://www.gbif.org/dataset/
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR)。 This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: 50bf3129-1576-4a22-b406-38b0b405bd1d。 Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) 發佈此資源，並經由DiSSCo同意向GBIF註冊成為資料發佈者。
關鍵字
Occurrence; Cypress; Mediterranean; nuSSR; Simple sequence repeats; Italy; Greece; Turkey; Specimen
聯絡資訊
- 連絡人
- Researcher
- v. Madonna del Piano 10
https://orcid.org/0000-0001-6909-0006
- 出處
- Research Director
- v. Madonna del Piano 10
- 出處
- v. Madonna del Piano, 10
- 出處
- 出處
- 出處
- 出處
- Principal investigator
- 出處
- 元數據提供者
- Senior Researcher
- v. Madonna del Piano 10
- 連絡人
- Reference Person
- v. Madonna del Piano 10
- 發布者
- Research Department
- p.le Aldo Moro 7
地理涵蓋範圍
Italy, Greece, Turkey, Tunisia
| 界定座標範圍 | 緯度南界 經度西界 [35.15, 9.21], 緯度北界 經度東界 [46.65, 31.44] |
|---|
分類群涵蓋範圍
Cupressus sempervirens L, Cupressus sempervirens var. numidica Trab. ex G.Barron, Cupressus sempervirens var. horizontalis (Mill.) Loudon
| Kingdom | Plantae |
|---|---|
| Phylum | Tracheophyta |
| Class | Pinopsida |
| Order | Pinales |
| Family | Cupressaceae |
時間涵蓋範圍
| 彙整期間 | 2006-2008 |
|---|
計畫資料
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity aims to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) that have been created and maintained through past and current research projects. || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project aims to create a network of biobanks (i.e., scientific research collections) where data and metadata associated with biological samples of different natures are collected and stored systematically and well-organized. Maintaining the existing collections will allow their future use for many purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals, and plants.
| 計畫名稱 | ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY |
|---|---|
| 辨識碼 | PNRR Project IR0000032 || CNR-DiSBA no. SAC.AD002.173 |
| 經費來源 | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173 |
| Project Award |
BioMemory Project (CNR-DiSBA) https://doi.org/10.13039/501100004462 Consiglio Nazionale delle Ricerche CNR-DiSBA no. SAC.AD002.173 https://www.disba.cnr.it/en/ ITINERIS - Italian Integrated Environmental Research Infrastructures System https://doi.org/10.13039/501100004462 Ministero dell'Università e della Ricerca PNRR Project IR0000032 https://itineris.cnr.it/ |
參與計畫的人員:
收藏資料
| 蒐藏名稱 | DNA and samples for genetic analyses of European forest trees species (CNR-IBBR-DNAFOR) |
|---|---|
| 蒐藏編號 | 90a41989-9906-41d4-aff9-0dc8420c7a45 |
| 標本保存方法 | Deep frozen, Dried |
|---|
引用文獻
- Bagnoli F, Vendramin GG, Buonamici A, Doulis G, Gonzalez-Martinez S, La Porta N, Magri D, Raddi P, Sebastiani F, Fineschi S (2009). Is Cupressus sempervirens native in Italy? An answer from genetic and palaeobotanical data. Molecular Ecology 18: 2276-2286. https://doi.org/10.1111/j.1365-294X.2009.04182.x
額外的詮釋資料
Data and samples collected and analyzed within the following research projects: EU project Interreg III B Medocc "MedCypre" and by the project ECOCYPRE (Ecological assessment and sustainable management of cypress in the landscape of Trentino) financially supported by the Provincia Autonoma of Trento with deliberation no. 437.
| Acknowledgements | PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being. |
|---|---|
| 目的 | Population genetics, Infraspecific biodiversity, Phylogeography, Adaptation, Climate change |
| 維護說明 | DNA extract at -20 °C in alcohol (vials) |
| 替代的識別碼 | 50bf3129-1576-4a22-b406-38b0b405bd1d |
| https://ipt.ibbr.cnr.it/ipt/resource?r=temp-dataset |