Описание
The dataset derives from the first large-scale analysis using nuclear molecular markers to assess the genetic diversity and structure of Cupressus sempervirens L. Genetic and fossil data were combined to infer the possible role of human activity and evolutionary history in shaping the diversity of cypress populations. Thirty populations with six polymorphic nuclear microsatellite markers were analyzed. Dramatic reductions in heterozygosity and allelic richness were observed from east to west across the species range. Structure analysis assigned individuals to two main groups separating the central Mediterranean and eastern populations. The two main groups could be further divided into five subgroups, which showed the following geographical distributions: Turkey with the Greek islands Rhodes and Samos, Greece (Crete), Southern Italy, Northern Italy, and Tunisia with Central Italy. This pattern of genetic structure is also supported by SAMOVA and Barrier analyses. Palaeobotanical data indicated that Cupressus was present in Italy in the Pliocene, Pleistocene, and Holocene.
Furthermore, the survey showed that Italian cypress populations experienced bottlenecks resulting in reduced genetic diversity, allelic richness, and higher genetic differentiation. Recent colonization or introduction may also have influenced levels of diversity detected in the Italian populations, as most individuals in this range today have multilocus genotypes also present in the eastern range of the species. The data reveal a new interpretation of the history of cypress distribution characterized by ancient eastern populations (Turkey and Greek islands) and a mosaic of recently introduced trees and remnants of ancient, depauperate populations in the central Mediterranean range.
Записи данных
Данные этого occurrence ресурса были опубликованы в виде Darwin Core Archive (DwC-A), который является стандартным форматом для обмена данными о биоразнообразии в виде набора из одной или нескольких таблиц. Основная таблица данных содержит 712 записей.
Также в наличии 3 таблиц с данными расширений. Записи расширений содержат дополнительную информацию об основной записи. Число записей в каждой таблице данных расширения показано ниже.
Данный экземпляр IPT архивирует данные и таким образом служит хранилищем данных. Данные и метаданные ресурсов доступны для скачивания в разделе Загрузки. В таблице версий перечислены другие версии ресурса, которые были доступны публично, что позволяет отслеживать изменения, внесенные в ресурс с течением времени.
Версии
В таблице ниже указаны только опубликованные версии ресурса, которые доступны для свободного скачивания.
Как оформить ссылку
Исследователи должны дать ссылку на эту работу следующим образом:
Bagnoli F, Vendramin GG, Buonamici A, Doulis G, Gonzalez-Martinez S, La Porta N, Magri D, Raddi P, Sebastiani F, Fineschi S (2024). Simple sequence repeats (SSRs) polymorphisms in Cupressus sempervirens (CNR-IBBR-DNAFOR). Version 1.0. GBIF Secretariat. Occurrence dataset. https://www.gbif.org/dataset/
Права
Исследователи должны соблюдать следующие права:
Публикующей организацией и владельцем прав на данную работу является Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Эта работа находится под лицензией Creative Commons Attribution Non Commercial (CC-BY-NC 4.0).
Регистрация в GBIF
Этот ресурс был зарегистрирован в GBIF, ему был присвоен следующий UUID: 50bf3129-1576-4a22-b406-38b0b405bd1d. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) отвечает за публикацию этого ресурса, и зарегистрирован в GBIF как издатель данных при оподдержке DiSSCo.
Ключевые слова
Occurrence; Cypress; Mediterranean; nuSSR; Simple sequence repeats; Italy; Greece; Turkey; Specimen
Внешние данные
Ресурс также доступен в других форматах
| API-JSON | https://biomemory.cnr.it/api/occurrences/json/?dataset=158 UTF-8 DwC |
|---|
Контакты
- Point Of Contact
- Researcher
- v. Madonna del Piano 10
https://orcid.org/0000-0001-6909-0006
- Originator
- Research Director
- v. Madonna del Piano 10
- Originator
- v. Madonna del Piano, 10
- Originator
- Originator
- Originator
- Originator
- Principal investigator
- Originator
- Originator
- Metadata Provider
- Senior Researcher
- v. Madonna del Piano 10
- Point Of Contact
- Reference Person
- v. Madonna del Piano 10
- Publisher
- Research Department
- p.le Aldo Moro 7
Географический охват
Italy, Greece, Turkey, Tunisia
| Ограничивающие координаты | Юг Запад [35,15, 9,21], Север Восток [46,65, 31,44] |
|---|
Таксономический охват
Cupressus sempervirens L, Cupressus sempervirens var. numidica Trab. ex G.Barron, Cupressus sempervirens var. horizontalis (Mill.) Loudon
| Kingdom | Plantae |
|---|---|
| Phylum | Tracheophyta |
| Class | Pinopsida |
| Order | Pinales |
| Family | Cupressaceae |
Временной охват
| Период формирования | 2006-2008 |
|---|
Данные проекта
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity aims to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) that have been created and maintained through past and current research projects. || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project aims to create a network of biobanks (i.e., scientific research collections) where data and metadata associated with biological samples of different natures are collected and stored systematically and well-organized. Maintaining the existing collections will allow their future use for many purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals, and plants.
| Название | ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY |
|---|---|
| Идентификатор | PNRR Project IR0000032 || CNR-DiSBA no. SAC.AD002.173 |
| Финансирование | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173 |
| Project Award |
BioMemory Project (CNR-DiSBA) https://doi.org/10.13039/501100004462 Consiglio Nazionale delle Ricerche CNR-DiSBA no. SAC.AD002.173 https://www.disba.cnr.it/en/ ITINERIS - Italian Integrated Environmental Research Infrastructures System https://doi.org/10.13039/501100004462 Ministero dell'Università e della Ricerca PNRR Project IR0000032 https://itineris.cnr.it/ |
Исполнители проекта:
Данные коллекции
| Название коллекции | DNA and samples for genetic analyses of European forest trees species (CNR-IBBR-DNAFOR) |
|---|---|
| Идентификатор коллекции | 90a41989-9906-41d4-aff9-0dc8420c7a45 |
| Методы сохранения образцов | Deep frozen, Dried |
|---|
Библиографические ссылки
- Bagnoli F, Vendramin GG, Buonamici A, Doulis G, Gonzalez-Martinez S, La Porta N, Magri D, Raddi P, Sebastiani F, Fineschi S (2009). Is Cupressus sempervirens native in Italy? An answer from genetic and palaeobotanical data. Molecular Ecology 18: 2276-2286. https://doi.org/10.1111/j.1365-294X.2009.04182.x
Дополнительные метаданные
Data and samples collected and analyzed within the following research projects: EU project Interreg III B Medocc "MedCypre" and by the project ECOCYPRE (Ecological assessment and sustainable management of cypress in the landscape of Trentino) financially supported by the Provincia Autonoma of Trento with deliberation no. 437.
| Acknowledgements | PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being. |
|---|---|
| Цель | Population genetics, Infraspecific biodiversity, Phylogeography, Adaptation, Climate change |
| Описание частоты обновления ресурса | DNA extract at -20 °C in alcohol (vials) |
| Альтернативные идентификаторы | 50bf3129-1576-4a22-b406-38b0b405bd1d |
| https://ipt.ibbr.cnr.it/ipt/resource?r=temp-dataset |