Description
The dataset derives from the first large-scale analysis using nuclear molecular markers to assess the genetic diversity and structure of Cupressus sempervirens L. Genetic and fossil data were combined to infer the possible role of human activity and evolutionary history in shaping the diversity of cypress populations. Thirty populations with six polymorphic nuclear microsatellite markers were analyzed. Dramatic reductions in heterozygosity and allelic richness were observed from east to west across the species range. Structure analysis assigned individuals to two main groups separating the central Mediterranean and eastern populations. The two main groups could be further divided into five subgroups, which showed the following geographical distributions: Turkey with the Greek islands Rhodes and Samos, Greece (Crete), Southern Italy, Northern Italy, and Tunisia with Central Italy. This pattern of genetic structure is also supported by SAMOVA and Barrier analyses. Palaeobotanical data indicated that Cupressus was present in Italy in the Pliocene, Pleistocene, and Holocene.
Furthermore, the survey showed that Italian cypress populations experienced bottlenecks resulting in reduced genetic diversity, allelic richness, and higher genetic differentiation. Recent colonization or introduction may also have influenced levels of diversity detected in the Italian populations, as most individuals in this range today have multilocus genotypes also present in the eastern range of the species. The data reveal a new interpretation of the history of cypress distribution characterized by ancient eastern populations (Turkey and Greek islands) and a mosaic of recently introduced trees and remnants of ancient, depauperate populations in the central Mediterranean range.
Enregistrements de données
Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 712 enregistrements.
3 tableurs de données d'extension existent également. Un enregistrement d'extension fournit des informations supplémentaires sur un enregistrement du cœur de standard (core). Le nombre d'enregistrements dans chaque tableur de données d'extension est illustré ci-dessous.
Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.
Versions
Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.
Comment citer
Les chercheurs doivent citer cette ressource comme suit:
Bagnoli F, Vendramin GG, Buonamici A, Doulis G, Gonzalez-Martinez S, La Porta N, Magri D, Raddi P, Sebastiani F, Fineschi S (2024). Simple sequence repeats (SSRs) polymorphisms in Cupressus sempervirens (CNR-IBBR-DNAFOR). Version 1.0. GBIF Secretariat. Occurrence dataset. https://www.gbif.org/dataset/
Droits
Les chercheurs doivent respecter la déclaration de droits suivante:
L’éditeur et détenteur des droits de cette ressource est Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Ce travail est sous licence Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0.
Enregistrement GBIF
Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : 50bf3129-1576-4a22-b406-38b0b405bd1d. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du DiSSCo.
Mots-clé
Occurrence; Cypress; Mediterranean; nuSSR; Simple sequence repeats; Italy; Greece; Turkey; Specimen
Données externes
Les données de la ressource sont disponibles dans d'autres formats
| API-JSON | https://biomemory.cnr.it/api/occurrences/json/?dataset=158 UTF-8 DwC |
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Contacts
- Personne De Contact
- Researcher
- v. Madonna del Piano 10
https://orcid.org/0000-0001-6909-0006
- Créateur
- Research Director
- v. Madonna del Piano 10
- Créateur
- v. Madonna del Piano, 10
- Créateur
- Créateur
- Créateur
- Créateur
- Principal investigator
- Créateur
- Créateur
- Fournisseur Des Métadonnées
- Senior Researcher
- v. Madonna del Piano 10
- Personne De Contact
- Reference Person
- v. Madonna del Piano 10
- Publicateur
- Research Department
- p.le Aldo Moro 7
Couverture géographique
Italy, Greece, Turkey, Tunisia
| Enveloppe géographique | Sud Ouest [35,15, 9,21], Nord Est [46,65, 31,44] |
|---|
Couverture taxonomique
Cupressus sempervirens L, Cupressus sempervirens var. numidica Trab. ex G.Barron, Cupressus sempervirens var. horizontalis (Mill.) Loudon
| Kingdom | Plantae |
|---|---|
| Phylum | Tracheophyta |
| Class | Pinopsida |
| Order | Pinales |
| Family | Cupressaceae |
Couverture temporelle
| Epoque de formation | 2006-2008 |
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Données sur le projet
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity aims to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) that have been created and maintained through past and current research projects. || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project aims to create a network of biobanks (i.e., scientific research collections) where data and metadata associated with biological samples of different natures are collected and stored systematically and well-organized. Maintaining the existing collections will allow their future use for many purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals, and plants.
| Titre | ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY |
|---|---|
| Identifiant | PNRR Project IR0000032 || CNR-DiSBA no. SAC.AD002.173 |
| Financement | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173 |
| Project Award |
BioMemory Project (CNR-DiSBA) https://doi.org/10.13039/501100004462 Consiglio Nazionale delle Ricerche CNR-DiSBA no. SAC.AD002.173 https://www.disba.cnr.it/en/ ITINERIS - Italian Integrated Environmental Research Infrastructures System https://doi.org/10.13039/501100004462 Ministero dell'Università e della Ricerca PNRR Project IR0000032 https://itineris.cnr.it/ |
Les personnes impliquées dans le projet:
Données de collection
| Nom de la collection | DNA and samples for genetic analyses of European forest trees species (CNR-IBBR-DNAFOR) |
|---|---|
| Identifiant de collection | 90a41989-9906-41d4-aff9-0dc8420c7a45 |
| Méthode de conservation des spécimens | Deep frozen, Dried |
|---|
Citations bibliographiques
- Bagnoli F, Vendramin GG, Buonamici A, Doulis G, Gonzalez-Martinez S, La Porta N, Magri D, Raddi P, Sebastiani F, Fineschi S (2009). Is Cupressus sempervirens native in Italy? An answer from genetic and palaeobotanical data. Molecular Ecology 18: 2276-2286. https://doi.org/10.1111/j.1365-294X.2009.04182.x
Métadonnées additionnelles
Data and samples collected and analyzed within the following research projects: EU project Interreg III B Medocc "MedCypre" and by the project ECOCYPRE (Ecological assessment and sustainable management of cypress in the landscape of Trentino) financially supported by the Provincia Autonoma of Trento with deliberation no. 437.
| Acknowledgements | PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being. |
|---|---|
| Objet | Population genetics, Infraspecific biodiversity, Phylogeography, Adaptation, Climate change |
| Description de la fréquence de mise à jour | DNA extract at -20 °C in alcohol (vials) |
| Identifiants alternatifs | 50bf3129-1576-4a22-b406-38b0b405bd1d |
| https://ipt.ibbr.cnr.it/ipt/resource?r=temp-dataset |