説明
The dataset derives from the first large-scale analysis using nuclear molecular markers to assess the genetic diversity and structure of Cupressus sempervirens L. Genetic and fossil data were combined to infer the possible role of human activity and evolutionary history in shaping the diversity of cypress populations. Thirty populations with six polymorphic nuclear microsatellite markers were analyzed. Dramatic reductions in heterozygosity and allelic richness were observed from east to west across the species range. Structure analysis assigned individuals to two main groups separating the central Mediterranean and eastern populations. The two main groups could be further divided into five subgroups, which showed the following geographical distributions: Turkey with the Greek islands Rhodes and Samos, Greece (Crete), Southern Italy, Northern Italy, and Tunisia with Central Italy. This pattern of genetic structure is also supported by SAMOVA and Barrier analyses. Palaeobotanical data indicated that Cupressus was present in Italy in the Pliocene, Pleistocene, and Holocene.
Furthermore, the survey showed that Italian cypress populations experienced bottlenecks resulting in reduced genetic diversity, allelic richness, and higher genetic differentiation. Recent colonization or introduction may also have influenced levels of diversity detected in the Italian populations, as most individuals in this range today have multilocus genotypes also present in the eastern range of the species. The data reveal a new interpretation of the history of cypress distribution characterized by ancient eastern populations (Turkey and Greek islands) and a mosaic of recently introduced trees and remnants of ancient, depauperate populations in the central Mediterranean range.
データ レコード
この オカレンス（観察データと標本) リソース内のデータは、1 つまたは複数のデータ テーブルとして生物多様性データを共有するための標準化された形式であるダーウィン コア アーカイブ (DwC-A) として公開されています。 コア データ テーブルには、712 レコードが含まれています。
拡張データ テーブルは3 件存在しています。拡張レコードは、コアのレコードについての追加情報を提供するものです。 各拡張データ テーブル内のレコード数を以下に示します。
この IPT はデータをアーカイブし、データ リポジトリとして機能します。データとリソースのメタデータは、 ダウンロード セクションからダウンロードできます。 バージョン テーブルから公開可能な他のバージョンを閲覧でき、リソースに加えられた変更を知ることができます。
バージョン
次の表は、公にアクセス可能な公開バージョンのリソースのみ表示しています。
引用方法
研究者はこの研究内容を以下のように引用する必要があります。:
Bagnoli F, Vendramin GG, Buonamici A, Doulis G, Gonzalez-Martinez S, La Porta N, Magri D, Raddi P, Sebastiani F, Fineschi S (2024). Simple sequence repeats (SSRs) polymorphisms in Cupressus sempervirens (CNR-IBBR-DNAFOR). Version 1.0. GBIF Secretariat. Occurrence dataset. https://www.gbif.org/dataset/
権利
研究者は権利に関する下記ステートメントを尊重する必要があります。:
パブリッシャーとライセンス保持者権利者は Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR)。 This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.
GBIF登録
このリソースをはGBIF と登録されており GBIF UUID: 50bf3129-1576-4a22-b406-38b0b405bd1dが割り当てられています。 DiSSCo によって承認されたデータ パブリッシャーとして GBIF に登録されているConsiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) が、このリソースをパブリッシュしました。
キーワード
Occurrence; Cypress; Mediterranean; nuSSR; Simple sequence repeats; Italy; Greece; Turkey; Specimen
外部データ
リソース データは他の形式で入手可能です。
| API-JSON | https://biomemory.cnr.it/api/occurrences/json/?dataset=158 UTF-8 DwC |
|---|
連絡先
- 連絡先
- Researcher
- v. Madonna del Piano 10
https://orcid.org/0000-0001-6909-0006
- 最初のデータ採集者
- Research Director
- v. Madonna del Piano 10
- 最初のデータ採集者
- v. Madonna del Piano, 10
- 最初のデータ採集者
- 最初のデータ採集者
- 最初のデータ採集者
- 最初のデータ採集者
- Principal investigator
- 最初のデータ採集者
- 最初のデータ採集者
- メタデータ提供者
- Senior Researcher
- v. Madonna del Piano 10
- 連絡先
- Reference Person
- v. Madonna del Piano 10
- データ公開者
- Research Department
- p.le Aldo Moro 7
地理的範囲
Italy, Greece, Turkey, Tunisia
| 座標（緯度経度） | 南 西 [35.15, 9.21], 北 東 [46.65, 31.44] |
|---|
生物分類学的範囲
Cupressus sempervirens L, Cupressus sempervirens var. numidica Trab. ex G.Barron, Cupressus sempervirens var. horizontalis (Mill.) Loudon
| Kingdom | Plantae |
|---|---|
| Phylum | Tracheophyta |
| Class | Pinopsida |
| Order | Pinales |
| Family | Cupressaceae |
時間的範囲
| 生成(収集）期間 | 2006-2008 |
|---|
プロジェクトデータ
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity aims to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) that have been created and maintained through past and current research projects. || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project aims to create a network of biobanks (i.e., scientific research collections) where data and metadata associated with biological samples of different natures are collected and stored systematically and well-organized. Maintaining the existing collections will allow their future use for many purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals, and plants.
| タイトル | ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY |
|---|---|
| 識別子 | PNRR Project IR0000032 || CNR-DiSBA no. SAC.AD002.173 |
| ファンデイング | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173 |
| Project Award |
BioMemory Project (CNR-DiSBA) https://doi.org/10.13039/501100004462 Consiglio Nazionale delle Ricerche CNR-DiSBA no. SAC.AD002.173 https://www.disba.cnr.it/en/ ITINERIS - Italian Integrated Environmental Research Infrastructures System https://doi.org/10.13039/501100004462 Ministero dell'Università e della Ricerca PNRR Project IR0000032 https://itineris.cnr.it/ |
プロジェクトに携わる要員:
コレクションデータ
| コレクション名 | DNA and samples for genetic analyses of European forest trees species (CNR-IBBR-DNAFOR) |
|---|---|
| コレクション識別子 | 90a41989-9906-41d4-aff9-0dc8420c7a45 |
| 標本保存方法 | Deep frozen, Dried |
|---|
書誌情報の引用
- Bagnoli F, Vendramin GG, Buonamici A, Doulis G, Gonzalez-Martinez S, La Porta N, Magri D, Raddi P, Sebastiani F, Fineschi S (2009). Is Cupressus sempervirens native in Italy? An answer from genetic and palaeobotanical data. Molecular Ecology 18: 2276-2286. https://doi.org/10.1111/j.1365-294X.2009.04182.x
追加のメタデータ
Data and samples collected and analyzed within the following research projects: EU project Interreg III B Medocc "MedCypre" and by the project ECOCYPRE (Ecological assessment and sustainable management of cypress in the landscape of Trentino) financially supported by the Provincia Autonoma of Trento with deliberation no. 437.
| 謝辞 | PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being. |
|---|---|
| 目的 | Population genetics, Infraspecific biodiversity, Phylogeography, Adaptation, Climate change |
| メンテナンス内容 | DNA extract at -20 °C in alcohol (vials) |
| 代替識別子 | 50bf3129-1576-4a22-b406-38b0b405bd1d |
| https://ipt.ibbr.cnr.it/ipt/resource?r=temp-dataset |