Description
PLAVIT Collection preserves more than 1100 isolates (Plant Viruses, Viroids, Bacteriophages) collected mainly in Italy but also from other countries (Europe, Asia, Africa, and America), including 134 distinct viral species belonging to the main taxonomic groups. A limited number of non-mechanically transmissible viral species are stored as infectious clones at - 80° C. Preservation Techniques: (i) Dried leaves: lyophilized infected leaves are stored at -20°C; (ii) Liquid Nitrogen: infected leaves are stored in liquid nitrogen.
The PLAVIT collection is partner of MIRRI Italian Node (http://www.mirri-it.it) and partner of H2020 EU project EVA-GLOBAL (https://www.european-virus-archive.com). Since 2015, It is also member of ECCO (European Culture Collection Organization) and of WFCC (World Federation of Culture Collection - number 1057).
Data Records
The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 438 records.
2 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versions
The table below shows only published versions of the resource that are publicly accessible.
How to cite
Researchers should cite this work as follows:
Accotto GP, Ciuffo M, Vaira A M, Birello G (2023). Plant Virus Italy - CNR-IPSP collection in Turin (CNR-IPSP-PLAVIT). Version 1.0. GBIF Secretariat. Occurrence dataset. https://www.gbif.org/grscicoll/collection/7b62ecf0-2d6e-4fc2-a22c-be7b674e690b
Rights
Researchers should respect the following rights statement:
The publisher and rights holder of this work is Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.
GBIF Registration
This resource has been registered with GBIF, and assigned the following GBIF UUID: 4f929122-4e6e-4b51-8647-c6b947c038d1. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by DiSSCo.
Keywords
Occurrence; Agriculture; Biocontrol agents; Diagnosis; Pest risk assessment; Biotechnology; Biodiversity; Health; Specimen
External data
The resource data is also available in other formats
| API JSON | https://biomemory.cnr.it/api/occurrences/json/?dataset=142 UTF-8 Darwin Core |
|---|---|
| SUS-MIRRI | https://www.sus-mirri.it/ UTF-8 HTML |
Contacts
- Point Of Contact
- Research Director
- Strada delle Cacce, 73
https://orcid.org/0000-0002-3825-1097
- Originator
- Curator and scientific responsible of the collection
- Strada delle Cacce, 73
- Originator
- Senior research scientist
- Strada delle Cacce, 73
- Originator
- Research Technician
- Strada delle Cacce, 73
- Metadata Provider
- Senior Researcher
- v. Madonna del Piano 10
- Metadata Provider
- Senior Technologist
- v. F. De Blasio 5
- Point Of Contact
- Reference Person
- Strada delle Cacce 73
- Content Provider
- Research Department
- p.le Aldo Moro 7
- Content Provider
- Research Institute
- Strada delle Cacce, 73
Geographic Coverage
Europe, Asia, Africa and America
| Bounding Coordinates | South West [-1.965, -102.008], North East [54.702, 105] |
|---|
Taxonomic Coverage
No Description available
| Kingdom | Plantae, Viruses |
|---|---|
| Phylum | Cressdnaviricota, Lenarviricota, Tracheophyta, Artverviricota, Pisuviricota, Negarnaviricota, Kitrinoviricota |
| Class | Duplopiviricetes, Milneviricetes, Revtraviricetes, Miaviricetes, Monjiviricetes, Magnoliopsida, Ellioviricetes, Tolucaviricetes, Alsuviricetes, Repensiviricetes, Stelpaviricetes, Pisoniviricetes |
| Order | Bunyavirales, Geraniales, Patatavirales, Sobelivirales, Picornavirales, Serpentovirales, Tolivirales, Ortervirales, Martellivirales, Durnavirales, Tymovirales, Mononegavirales, Geplafuvirales, Ourlivirales |
| Family | Caulimoviridae, Alphaflexiviridae, Botourmiaviridae, Tymoviridae, Potyviridae, Solemoviridae, Betaflexiviridae, Geraniaceae, Geminiviridae, Tospoviridae, Virgaviridae, Aspiviridae, Bromoviridae, Rhabdoviridae, Secoviridae, Tombusviridae, Partitiviridae, Closteroviridae |
Temporal Coverage
| Formation Period | 1905-2023 |
|---|
Project Data
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC). Extended digital specimens will be linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.) in the frame of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. Reference to genetic/genomic data for each specimen will allow for the identification of the most interesting material for further genetic/genomic analysis. BioMemory (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.
| Title | ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY |
|---|---|
| Identifier | PNRR Project IR0000032 | CNR SAC.AD002.173 |
| Funding | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BioMemory (CNR-DiSBA Project No. SAC.AD002.173) - CNR-DiSBA - Department of Bio-Agrofood Sciences, National Research Council of Italy |
| Project Award |
BioMemory Project (CNR-DiSBA) https://doi.org/10.13039/501100004462 Consiglio Nazionale delle Ricerche CNR-DiSBA no. SAC.AD002.173 https://www.disba.cnr.it/en/ ITINERIS - Italian Integrated Environmental Research Infrastructures System https://doi.org/10.13039/501100004462 Ministero dell'Università e della Ricerca PNRR Project IR0000032 https://itineris.cnr.it/ |
The personnel involved in the project:
Collection Data
| Collection Name | Plant Virus Italy |
|---|---|
| Collection Identifier | 7b62ecf0-2d6e-4fc2-a22c-be7b674e690b |
| Specimen preservation methods | Deep frozen, Other |
|---|
Additional Metadata
Data and samples were collected and analyzed within the following research projects: MIRRI (http://www.mirri-it.it); H2020 EU project EVA-GLOBAL (www.european-virus-archive.com); EU project SUS-MIRRI (https://www.sus-mirri.it/).
| Acknowledgements | PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being. |
|---|---|
| Purpose | Agriculture, Biocontrol agents, Diagnosis, Pest risk assessment, Biotechnology, Biodiversity, Health |
| Maintenance Description | Dried leaves: lyophilised infected leaves stored at -20°C; Liquid Nitrogen: infected leaves stored in liquid nitrogen |
| Alternative Identifiers | 4f929122-4e6e-4b51-8647-c6b947c038d1 |
| https://ipt.ibbr.cnr.it/ipt/resource?r=plavit-01 |