Description
The ISA01-CC dataset includes about 300 strains of lactic acid bacteria and 400 strains of yeasts. The strains are mainly isolated from the Mediterranean agro-food systems and typical fermented foods (sourdough, dairy products, wine and grape, cereals, whey) and human faeces. The main species collected among lactic acid bacteria are: Levilactobacillus brevis, Companilactobacillus alimentarius, Leuconostoc pseudomesenteroides, Fructilactobacillus sanfranciscensis, Lacticaseibacillus casei, Lacticaseibacillus rhamnosus, etc. The main species collected among yeasts are Saccharomyces cerevisiae, Hanseniaspora guilliermondii, H. uvarum, Pichia kudriavzevii, Met. fructicula.
Data Records
The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 318 records.
3 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versions
The table below shows only published versions of the resource that are publicly accessible.
How to cite
Researchers should cite this work as follows:
d’Acierno A, Nazzaro F, Reale A, Sorrentino A, Rossi M, Pascale M (2024). CNR-ISA Agri-food Microorganism Dataset (ISA01-CC), version 1.1. Institute for Food Sciences, Department of Bio-Agri-Food Sciences, National Research Council of Italy, Avellino, Italy. Occurrence dataset https://doi.org/10.15468/2ze5cv
Rights
Researchers should respect the following rights statement:
The publisher and rights holder of this work is Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.
GBIF Registration
This resource has been registered with GBIF, and assigned the following GBIF UUID: aebc4372-55b7-4ddf-8bd1-5693eb67e8b3. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by DiSSCo.
Keywords
Occurrence; Lactobacillus; Hanseniaspora uvarum; Saccharomyces cerevisiae; Issatchenkia orientalis; Kluyveromyces marxianus; Metschnikowia fructicola; Metschnikowia pulcherrima; Debaryomyces delbrueckii; Bacteria; Yeasts; Culture Strains; Specimen; Food; Functional Foods; Nutraceuticals; Health; Biocontrol agents; Biofuel
External data
The resource data is also available in other formats
| API JSON | https://biomemory.cnr.it/api/occurrences/json/?dataset=113 UTF-8 JSON |
|---|
Contacts
- Originator
- Researcher
- v. Roma 64
https://orcid.org/0000-0003-0516-0794
- Originator
- Research director
- v. Roma 64
- Originator
- Responsible for molecular identification
- v. Roma 64
- Originator
- Researcher
- v. Roma 64
- Originator
- Research Director
- v. Roma 64
- Metadata Provider
- Senior Researcher
- v. Madonna del Piano 10
- Metadata Provider
- Senior Technologist
- v. F. De Blasio 5
- Point Of Contact
- Director of the Collection
- v. Roma 64
- Content Provider
- Research Department
Geographic Coverage
Italy
| Bounding Coordinates | South West [36.529, 6.519], North East [47.103, 18.536] |
|---|
Taxonomic Coverage
Lactic acid bacteria belonging to the following genera: Lactobacillus, Companilactobacillus, Lacticaseibacillus, Latilactobacillus, Lactiplantibacillus, Furfurilactobacillus, Limosilactobacillus, Fructilactobacillus, Levilactobacillus, Leuconostoc, Weissella and Pediococcus. Yeasts belonging to genera: Hanseniaspora, Rhodotorula, Metschnikowia and Pichia.
| Kingdom | Fungi, Bacteria |
|---|---|
| Phylum | Firmicutes, Actinobacteriota, Ascomycota, Bacillota |
| Class | Actinomycetia, Bacilli, Saccharomycetes |
| Order | Saccharomycetales, Actinomycetales, Lactobacillales |
| Family | Micrococcaceae, Saccharomycetaceae, Saccharomycodaceae, Pichiaceae, Metschnikowiaceae, Lactobacillaceae |
Temporal Coverage
| Formation Period | 2015-current |
|---|
Project Data
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity aims to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) that have been created and maintained through past and current research projects. BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project aims to create a network of biobanks (i.e., scientific research collections) where data and metadata associated with biological samples of different natures are collected and stored systematically and well-organized. Maintaining the existing collections will allow their future use for many purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals, and plants.
| Title | ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY |
|---|---|
| Identifier | PNRR Project IR0000032 || CNR-DiSBA no. SAC.AD002.173 |
| Funding | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173 |
| Project Award |
BioMemory Project (CNR-DiSBA) https://doi.org/10.13039/501100004462 Consiglio Nazionale delle Ricerche CNR-DiSBA no. SAC.AD002.173 https://www.disba.cnr.it/en/ ITINERIS - Italian Integrated Environmental Research Infrastructures System https://doi.org/10.13039/501100004462 Ministero dell'Università e della Ricerca PNRR Project IR0000032 https://itineris.cnr.it/ |
| Related Projects |
Strengthening the MIRRI Italian Research Infrastructure for Sustainable Bioscience and Bioeconomy https://www.sus-mirri.it/ |
The personnel involved in the project:
Collection Data
| Collection Name | ISA Culture Collection (CNR-ISA-CC) |
|---|---|
| Collection Identifier | 04f88630-cb9a-42f6-b46b-c1f2f9a9d430 |
| Specimen preservation methods | Deep frozen, Refrigerated, Other |
|---|
Additional Metadata
Samples collected and analyzed within the following research projects: MIRRI-IT (https://www.mirri-it.it/), SUS-MIRRI (https://www.sus-mirri.it/)
| Acknowledgements | PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being. |
|---|---|
| Purpose | Food, Functional Foods, Nutraceuticals, Health, Biocontrol agents, Biofuel |
| Maintenance Description | Cryo: For lactic acid bacteria, ultrafrezeer at- 80 °C and -20 °C in cryovials with cells in MRS broth medium and glycerol (20% v/v); For yeasts, -20 °C, in cryovials with specific medium (YPDb) and glycerol (20%). Fresh cultures: For lactic acid bacteria, refrigerator at 4°C in MRS soft agar medium; for yeasts, refrigeration at 4 °C in slant of YPD medium. |
| Alternative Identifiers | aebc4372-55b7-4ddf-8bd1-5693eb67e8b3 |
| https://ipt.ibbr.cnr.it/ipt/resource?r=isa01-cc |