IPSP Dataset of Bacterial Species Collection (IPSP-BAC)

Occurrence
Latest version published by Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) on Aug 14, 2024 Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR)

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 36 records in English (14 KB) - Update frequency: as needed
Metadata as an EML file download in English (16 KB)
Metadata as an RTF file download in English (10 KB)

Description

The CNR-IPSP-BAC includes about 100 bacterial strains isolated from different host plants from the Mediterranean area, including pathogenic or beneficial plant bacterial species belonging to Agrobacterium, Bacillus, Erwinia and Pseudomonas genera. Preservation techniques - Cryo: bacterial suspensions in water glycerol (30% v/v) stored at- 80 °C in cryovials; Fresh cultures: bacterial suspensions in ultrapure water stored at 4 °C in plastic tubes. Aims: Taxonomical Identification (morphological, biochemical and molecular), isolation, preservation and cultivation of microorganisms.

Data Records

The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 36 records.

3 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.

Occurrence (core)
36
Preparation 
36
Preservation 
36
GermplasmAccession 
36

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Raio A, Schillaci M (2024). IPSP Dataset of Bacterial Species Collection (IPSP-BAC). Version 1.0. GBIF Secretariat. Occurrence dataset. https://www.gbif.org/dataset/

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 2a5f75af-401e-4362-850e-b6efb6849dd1.  Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by DiSSCo.

Keywords

Occurrence; Agriculture; Biocontrol agents; PGPR; Specimen

External data

The resource data is also available in other formats

Contacts

Aida Raio
  • Point Of Contact
  • Curator and scientific responsible of the collection of bacterial species
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence), National Research Council of Italy
  • Via Madonna del Piano 10
I-50019 Sesto Fiorentino
FI
IT
Martino Schillaci
  • Originator
  • Post-doc
CNR-IPSP-BA, Institute for Sustainable Plant Protection (IPSP) - Section of Bari, National Research Council of Italy
  • Via Amendola 122/D
I-70126 Bari
BA
IT
Gabriele Bucci
  • Metadata Provider
  • Senior Researcher
CNR-IBBR, Institute of Biosciences and BioResources, National Research Council of Italy
  • v. Madonna del Piano 10
I-50019 Sesto Fiorentino
FI
Aida Raio
  • Point Of Contact
  • Reference Person
CNR-IPSP-FI, Institute for Sustainable Plant Protection (IPSP) - Section of Sesto Fiorentino (Florence)
  • Via Madonna del Piano 10
I-50019 Sesto Fiorentino
FI
IT
Dept. of Bio-Agrifood Sciences
  • Content Provider
  • Research Department
National Research Council of Italy (CNR)
  • p.le Aldo Moro 7
Rome
RM
IT

Geographic Coverage

Italy, Algeria, Pakistan, United States of America

Bounding Coordinates South West [-90, -180], North East [90, 180]

Temporal Coverage

Formation Period 2013-current

Project Data

ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. The full digitization of the research collections currently offline will be achieved along with the reorganization, standardization and harmonization of the data and metadata currently available in the main online collections. All the taxonomic, genetic, geographical, ecological, physiological information for each specimen will be organized in an easily searchable platform supported by web-GIS functionalities. Reference to genetic/genomic data for each specimen will allow for the identification of the most interesting material for further genetic/genomic analysis. The availability of such huge amount of information on plant, animal, and microbial genetic resources will pave the way for the dissection of the morpho-physiological and molecular mechanisms of adaptation to climate change. BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.

Title ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY
Identifier PNRR Project IR0000032 | CNR SAC.AD002.173
Funding ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173).

The personnel involved in the project:

Giovanni Giuseppe Vendramin
Mauro Centritto

Collection Data

Collection Name IPSP Collection of Bacterial Species
Collection Identifier 976e0760-4db6-4209-afa4-17c4098b78f3
Specimen preservation methods Deep frozen,  Refrigerated

Additional Metadata

Data and samples collected and analyzed within the following research projects: Partner of MIRRI Italian Node (www.mirri-it.it);

Purpose

Agriculture, Biocontrol agents, PGPR

Maintenance Description Cryo: bacterial suspensions in water glycerol (30% v/v) stored at- 80 °C in cryovials; Fresh cultures: bacterial suspensions in ultrapure water stored at 4°C in plastic tubes
Alternative Identifiers 2a5f75af-401e-4362-850e-b6efb6849dd1
https://ipt.ibbr.cnr.it/ipt/resource?r=ipsp-fi-bac