Description
MLIP collection preserves fungal, microalgal and bacterial strains, mainly isolated from the Mediterranean agro-food and natural systems. It contains in vivo and in vitro cultures of arbuscular mycorrhizal fungal (AMF) isolates, endophytic bacteria from Canapa sp., Psoralea sp., phycospheric and mycorrhizospheric/rhizospheric bacteria.
Data Records
The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 204 records.
4 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versions
The table below shows only published versions of the resource that are publicly accessible.
How to cite
Researchers should cite this work as follows:
Sbrana C, Chiellini C (2022). Microbiology Lab IBBA Pisa Bacteria Dataset (IBBA-MLIP-BACTERIA). CNR-IBBA Institute of Agricultural Biology and Biotechnology, National Research Council of Italy, Pisa, Italy. Version 1.0. GBIF Secretariat. Occurrence dataset. [online] URL: https://scientific-collections.gbif.org/collection/85bb62f8-dc53-41d0-b0b0-980acdaa461d
Rights
Researchers should respect the following rights statement:
The publisher and rights holder of this work is Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.
GBIF Registration
This resource has been registered with GBIF, and assigned the following GBIF UUID: 7af9ca94-74e7-4cd5-9230-ff1f14cd748a. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by DiSSCo.
Keywords
Occurrence; Endophytic Bacteria; Soil Bacteria; Phycospheric Bacteria; Specimen
External data
The resource data is also available in other formats
| API JSON | https://biomemory.cnr.it/api/occurrences/json/?dataset=125 UTF-8 Darwin Core |
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Contacts
- Point Of Contact
- Curator and scientific responsible of the collection
- v. Moruzzi 1
https://orcid.org/0000-0002-8058-8566
- Originator
- Curator and scientific responsible of the collection
- v. Moruzzi 1
- Metadata Provider
- Senior Researcher
- v. Madonna del Piano 10
- Metadata Provider
- Senior Technologist
- v. F. De Blasio 5
- Point Of Contact
- Reference Person
- v. Moruzzi 1
- Content Provider
- Research Department
- p.le Aldo Moro 7
- Content Provider
Geographic Coverage
Italy
| Bounding Coordinates | South West [36.315, 6.328], North East [47.279, 19.16] |
|---|
Taxonomic Coverage
Bacteria mainly belonging to Bacillaceae, Pseudomonadaceae, Actinobacteria, Xanthomonadaceae.
| Kingdom | Bacteria |
|---|---|
| Phylum | Firmicutes, Bacteroidota, Proteobacteria, Actinobacteriota |
| Class | Alphaproteobacteria, Actinomycetia, Bacilli, Gammaproteobacteria, Bacteroidia |
| Order | Paenibacillales, Sphingobacteriales, Sphingomonadales, Cytophagales, Actinomycetales, Caulobacterales, Xanthomonadales, Staphylococcales, Pseudomonadales, Rhodobacterales, Mycobacteriales, Bacillales_B, Bacillales_A, Bacillales, Rhizobiales, Enterobacterales |
| Family | Alteromonadaceae, Micrococcaceae, Sphingobacteriaceae, Xanthomonadaceae, Paenibacillaceae, Rhizobiaceae, Cellulomonadaceae, Beijerinckiaceae, Bacillaceae, Bacillaceae_H, Planococcaceae, Caulobacteraceae, Mycobacteriaceae, Staphylococcaceae, Rhodobacteraceae, Spirosomaceae, Microbacteriaceae, Pseudomonadaceae, Sphingomonadaceae |
Temporal Coverage
| Formation Period | 2001-present |
|---|
Project Data
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC) in terms of extended digital specimens fully linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.
| Title | ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY |
|---|---|
| Identifier | PNRR Project IR0000032 | CNR SAC.AD002.173 |
| Funding | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BIOMEMORY Project (CNR-DiSBA Project No. SAC.AD002.173 - The network of biological collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being |
| Project Award |
BioMemory Project (CNR-DiSBA) https://doi.org/10.13039/501100004462 Consiglio Nazionale delle Ricerche CNR-DiSBA no. SAC.AD002.173 https://www.disba.cnr.it/en/ ITINERIS - Italian Integrated Environmental Research Infrastructures System https://doi.org/10.13039/501100004462 Ministero dell'Università e della Ricerca PNRR Project IR0000032 https://itineris.cnr.it/ |
The personnel involved in the project:
Collection Data
| Collection Name | Microbiology Lab IBBA Pisa Collection |
|---|---|
| Collection Identifier | 85bb62f8-dc53-41d0-b0b0-980acdaa461d |
| Specimen preservation methods | Deep frozen, Refrigerated |
|---|
Additional Metadata
IBBA-MLIP-BACTERIA collection specimens are available for research use only upon request to the authors.
| Acknowledgements | PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being. |
|---|---|
| Purpose | Crop biofertilizers and biostimulants (either single isolates or consortia), biocontrol agents, bioremediation, phycoremediation, source of molecules of nutraceutical interest (microalgae). |
| Maintenance Description | Cryo: Frezeer at -80 °C and -20 °C, in cryovials with 20% glycerol. Fresh cultures: Refrigerator at 4°C in vials with Vials/plates streaks of bacterial isolates on agar media. |
| Alternative Identifiers | 7af9ca94-74e7-4cd5-9230-ff1f14cd748a |
| https://ipt.ibbr.cnr.it/ipt/resource?r=ibba-mlip-bacteria |