Description
The dataset includes Ascomycetous fungi isolated from forest and urban trees (Ophiostoma ulmi, O.novo-ulmi , Ceratocystis platani, Diplodia sapinea, Botryosphaericeae) and oomycetes isolated in ornamental nursery (Pythium, Phytophthora, Mortariella). The CNR-IPSP-FPOFUAOPWS collection preserves about 1500 strains for research purposes, also includes strains from collections of other Research centers or Universities. The strains are mainly isolated from plant tissues in different geographical areas. Preservation techniques: (i) CRYO: Freezer at -20 °C, in cryovials with spore suspension or with mycelium plug in water glycerol (50% v/v) or in pure water; (ii) FRESH CULTURES: Refrigerator at 4 °C in agar slants with mycelium. The ultimate goals of the collection are: taxonomical Identification (morphological, molecular), molecular typing; isolation, preservation and cultivation of microorganisms; population genetic studies; genetic and phenotypic variability; host-pathogen interaction; inoculation for disease resistance; biocontrol; ecological and physiology studies, biochemical characterization. The collection is a partner of the MIRRI Italian Node (https://www.mirri-it.it).
Data Records
The data in this occurrence resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 134 records.
3 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versions
The table below shows only published versions of the resource that are publicly accessible.
How to cite
Researchers should cite this work as follows:
Luchi N, Santini A, Migliorini D, Pepori AL, Pecori F (2022). CNR-IPSP Tree Fungal Pathogens Dataset (collection CNR-IPSP-FPOFUAOPWS). Version 1.0. GBIF Secretariat. Occurrence dataset. - doi: https://doi.org/10.15468/2wsrke
Rights
Researchers should respect the following rights statement:
The publisher and rights holder of this work is Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.
GBIF Registration
This resource has been registered with GBIF, and assigned the following GBIF UUID: 36075f43-5d48-4346-a82c-99bce4f02389. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) publishes this resource, and is itself registered in GBIF as a data publisher endorsed by DiSSCo.
Keywords
Occurrence; Plant pathology; Tree species; Forestry; Ophiostoma ulmi; Ophiostoma himal-ulmi; Ophiostoma quercus; Ophiostoma sp.; Specimen
External data
The resource data is also available in other formats
| API-JSON | https://biomemory.cnr.it/api/occurrences/json/?dataset=107 UTF-8 Darwin Core |
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Contacts
- Point Of Contact
- Curator and scientific responsible for the molecular characterization of the collection
- Via Madonna del Piano 10
https://orcid.org/0000-0003-3119-7574
- Originator
- Curator and scientific responsible of the collection
- Via Madonna del Piano 10
- Originator
- Molecular characterization and responsible of database collection
- Via Madonna del Piano 10
- Originator
- Responsible for molecular characterization and strain preservation
- Via Madonna del Piano 10
- Originator
- Responsible for molecular characterization and micropropagation
- Via Madonna del Piano 10
- Metadata Provider
- Senior Researcher
- v. Madonna del Piano 10
- Point Of Contact
- Reference Person
- Via Madonna del Piano 10
- Metadata Provider
- Research Department
- p.le Aldo Moro 7
- Content Provider
Geographic Coverage
Italy
| Bounding Coordinates | South West [38.154, 10.005], North East [44.227, 14.617] |
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Taxonomic Coverage
Ascomycetous fungi isolated from forest and urban trees (Ophiostoma ulmi, O.novo-ulmi, Ceratocystis platani, Diplodia sapinea, Botryosphaericeae) and oomycetes isolated in ornamental nursery (Pythium, Phytophthora, Mortariella).
| Kingdom | Fungi |
|---|---|
| Phylum | Ascomycota |
| Class | Sordariomycetes |
| Order | Ophiostomatales |
| Family | Ophiostomataceae |
Temporal Coverage
| Formation Period | 1999-present |
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Project Data
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity aims to provide biodiversity (meta)data linked to Natural Science Collections (NSC) and related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.). The expected outcome of the activity is the implementation of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) that have been created and maintained through past and current research projects. || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project aims to create a network of biobanks (i.e., scientific research collections) where data and metadata associated with biological samples of different natures are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for many purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.
| Title | ITINERIS - Italian Integrated Environmental Research Infrastructures System / BIOMEMORY |
|---|---|
| Identifier | PNRR Project IR0000032 || CNR-DiSBA no. SAC.AD002.173 |
| Funding | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” || BIOMEMORY (CNR-DiSBA Project No. SAC.AD002.173 |
| Project Award |
BioMemory Project (CNR-DiSBA) https://doi.org/10.13039/501100004462 Consiglio Nazionale delle Ricerche CNR-DiSBA no. SAC.AD002.173 https://www.disba.cnr.it/en/ ITINERIS - Italian Integrated Environmental Research Infrastructures System https://doi.org/10.13039/501100004462 Ministero dell'Università e della Ricerca PNRR Project IR0000032 https://itineris.cnr.it/ |
The personnel involved in the project:
Collection Data
| Collection Name | CNR-IPSP-FPOFUAOPWS - Fungal Pathogens of Forest, Urban and Ornamental Plant Woody Species |
|---|---|
| Collection Identifier | 3266e65b-77cb-4d96-9ba8-5f392445f867 |
| Specimen preservation methods | Refrigerated, Glycerin |
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Additional Metadata
The collection participates in the MIRRI Italian Node (https://www.mirri-it.it) and has been involved in the CNR project "BioGenRes" (http://www.biogenres.cnr.it/).
| Acknowledgements | PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being. |
|---|---|
| Purpose | Taxonomical Identification through morphological and molecular characterization of specimens; molecular typing; isolation, preservation, and cultivation of microorganisms; population genetic studies; genetic and phenotypic variability; host-pathogen interaction; inoculation for disease resistance; biocontrol; ecological and physiology studies, biochemical characterization; plant pathology, agriculture, forestry |
| Maintenance Description | CRYO: Freezer at -20 °C, in cryovials with spore suspension or with mycelium plug in water glycerol (50% v/v) or in pure water. FRESH CULTURES: Refrigerator at 4 °C in agar slants with mycelium. |
| Alternative Identifiers | 36075f43-5d48-4346-a82c-99bce4f02389 |
| https://ipt.ibbr.cnr.it/ipt/resource?r=cnr-ipsp-tree-fungal-pathogens |