說明
The dataset includes metadata of endophytic bacteria with plant growth promoting activity and bacteria usable for bio-remedation of polluted environments from the CNR-IBBR-SUB collection, which is maintained at Institute of Biosciences and Bioresources (IBBR) in Naples, Italy. Endophytic bacteria were isolated from rice plants grown in Italy and in the State of Mali (West Africa), while polycyclic aromatic hydrocarbon degrading bacteria were isolated from the industrial zone of the port of Marghera (Venice, Italy). Microorganisms are cryopreserved at -80 °C resuspended in growth media containing cryoprotectants (glycerol). Frozen microorganisms can be revived by thawing at 37 °C and inoculating into fresh culture medium. The main aim of the collection is to study bacteria interacting with legumes and cereals (e.g., N-fixation, phytohormones production, etc.) and their ability to improve host plants resistance to abiotic stresses.
資料紀錄
此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 84 筆紀錄。
亦存在 3 筆延伸集的資料表。延伸集中的紀錄補充核心集中紀錄的額外資訊。 每個延伸集資料表中資料筆數顯示如下。
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Bianco C, Defez R (2023). Rhizobacteria promoting plant growth and bacteria degrading toxic pollutants (CNR-IBBR-SUB). Version 1.0. GBIF Secretariat. Occurrence dataset. - doi: https://doi.org/10.15468/bprp46
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR)。 This work is licensed under a Creative Commons Attribution Non Commercial (CC-BY-NC 4.0) License.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: 2aeae1a6-4478-4577-8519-e3898ef1bf12。 Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) 發佈此資源，並經由DiSSCo同意向GBIF註冊成為資料發佈者。
關鍵字
Occurrence; Genomics; proteomics; metabolomics; bacteria; rhizobacteria; Specimen
聯絡資訊
- 連絡人
- Researcher
- v. Pietro Castellino 111
https://orcid.org/0000-0002-8489-3779
- 出處
- Researcher
- v. Pietro Castellino 111
- 元數據提供者
- Senior Researcher
- v. Madonna del Piano 10
- 連絡人
- Reference Person
- v. Pietro Castellino 111
- 擁有者
- Research Institute
- v. Piero Castellino 111
地理涵蓋範圍
Italy, Europe and Mali, Western-Central Africa
| 界定座標範圍 | 緯度南界 經度西界 [13.083, -8], 緯度北界 經度東界 [46.559, 14.062] |
|---|
分類群涵蓋範圍
The following families are represented: Enterobacterales, Sphingobacteriales, Pseudomonadales, Flavobacteriales, Xanthomonadales, Actinomycetales.
| Kingdom | Bacteria |
|---|---|
| Phylum | Firmicutes, Bacteroidota, Proteobacteria, Actinobacteriota |
| Class | Actinomycetia, Bacilli, Gammaproteobacteria, Bacteroidia |
| Order | Paenibacillales, Sphingobacteriales, Actinomycetales, Xanthomonadales, Pseudomonadales, Exiguobacterales, Flavobacteriales, Bacillales, Enterobacterales, Burkholderiales |
| Family | Micrococcaceae, Sphingobacteriaceae, Xanthomonadaceae, Paenibacillaceae, Weeksellaceae, Exiguobacteraceae, Aeromonadaceae, Bacillaceae, Shewanellaceae, Microbacteriaceae, Burkholderiaceae, Pseudomonadaceae, Enterobacteriaceae, Moraxellaceae |
時間涵蓋範圍
| 彙整期間 | 2013-2016 |
|---|
計畫資料
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC). Extended digital specimens will be linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.) in the frame of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. Reference to genetic/genomic data for each specimen will allow for the identification of the most interesting material for further genetic/genomic analysis. BioMemory (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.
| 計畫名稱 | ITINERIS - Italian Integrated Environmental Research Infrastructures System | BIOMEMORY |
|---|---|
| 辨識碼 | PNRR Project IR0000032 | CNR SAC.AD002.173 |
| 經費來源 | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BioMemory (CNR-DiSBA Project No. SAC.AD002.173) - CNR-DiSBA - Department of Bio-Agrofood Sciences, National Research Council of Italy |
| Project Award |
BioMemory Project (CNR-DiSBA) https://doi.org/10.13039/501100004462 Consiglio Nazionale delle Ricerche CNR-DiSBA no. SAC.AD002.173 https://www.disba.cnr.it/en/ ITINERIS - Italian Integrated Environmental Research Infrastructures System https://doi.org/10.13039/501100004462 Ministero dell'Università e della Ricerca PNRR Project IR0000032 https://itineris.cnr.it/ |
| Related Projects |
MICRO4Legumes (“Il microbioma vegetale simbionte come strumento per il miglioramento delle leguminose foraggere”), D.M.n.89267 (Italian Ministry of Agriculture) D.M.n.89267 COST Action CA18111 "Genome Editing in Plants - A Technology with Transformative Potential" (PlantEd) CA18111 European Commission - ABSTRESS project (FP7 KBBE-2011-289562) FP7 KBBE-2011-289562 |
參與計畫的人員:
收藏資料
| 蒐藏名稱 | Rhizobacteria promoting plant growth and bacteria degrading toxic pollutants (CNR-IBBR-SUB) |
|---|---|
| 蒐藏編號 | bf6ef975-8cde-47ea-9037-9ca01d8d61ea |
| 標本保存方法 | Deep frozen, Glycerin |
|---|
引用文獻
- Bianco C, Andreozzi A, Romano S, Fagorzi C, Cangioli L, Prieto P, Cisse F, Niangado O, Sidibé A, Pianezze S, et al. (2021). Endophytes from African Rice (Oryza glaberrima L.) efficiently colonize Asian Rice (Oryza sativa L.) stimulating the activity of its antioxidant enzymes and increasing the content of nitrogen, carbon, and chlorophyll. Microorganisms 9, 1714. https://doi.org/10.3390/microorganisms9081714
- The overproduction of indole-3-acetic acid (IAA) in endophytes up-regulates nitrogen-fixation in both bacterial cultures and inoculated rice plants. Microbial Ecology, 74, 441-452. https://doi.org/10.1007/s00248-017-0948-4
- Bianco C, Defez R (2015). Microorganisms and their use for environmental cleanup. Patent no. RM2015A00096, National Research Council of Italy, Rome, Italy. http://www.cnr.it/ontology/cnr/individuo/prodotto/ID326828
額外的詮釋資料
| Acknowledgements | PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being. |
|---|---|
| 目的 | Microbiology; genomics; metabolomics. Microbiology: growth and manipulation of bacteria. Molecular Biology: isolation and manipulation of nucleic acids; cloning and heterologous expression of genes of interest in model organisms (E. coli); gene expression analysis (RT-PCR, RNA-seq). Biochemistry: structural and functional analysis of proteins by SDS-PAGE, native-PAGE and western blot; UV-visible, fluorescent and circular dichroism spectroscopy; enzymatic assays (varius enzymes inclucing DNA polymerases); in vitro DNA-ligand interaction techniques by innovative techniques, as the Surface Plasmon Resonance (SPR) and Bio-Layer Interferometry (BLI); fluorescence microscopy for in vivo study of bacteria, nematodes, and plants. |
| 維護說明 | Microorganisms are cryopreserved at temperatures below freezing (-80 °C). To prevent damage to cells caused by ice crystal formation, cells are resuspended in growth media containing cryoprotectants such as glycerol prior to storage at -80 °C. Frozen microorganisms can be revived by thawing at 37 °C and inoculating into fresh culture medium. |
| 替代的識別碼 | 2aeae1a6-4478-4577-8519-e3898ef1bf12 |
| https://ipt.ibbr.cnr.it/ipt/resource?r=cnr-ibbr-sub |