Description
The dataset includes metadata of endophytic bacteria with plant growth promoting activity and bacteria usable for bio-remedation of polluted environments from the CNR-IBBR-SUB collection, which is maintained at Institute of Biosciences and Bioresources (IBBR) in Naples, Italy. Endophytic bacteria were isolated from rice plants grown in Italy and in the State of Mali (West Africa), while polycyclic aromatic hydrocarbon degrading bacteria were isolated from the industrial zone of the port of Marghera (Venice, Italy). Microorganisms are cryopreserved at -80 °C resuspended in growth media containing cryoprotectants (glycerol). Frozen microorganisms can be revived by thawing at 37 °C and inoculating into fresh culture medium. The main aim of the collection is to study bacteria interacting with legumes and cereals (e.g., N-fixation, phytohormones production, etc.) and their ability to improve host plants resistance to abiotic stresses.
Enregistrements de données
Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 84 enregistrements.
3 tableurs de données d'extension existent également. Un enregistrement d'extension fournit des informations supplémentaires sur un enregistrement du cœur de standard (core). Le nombre d'enregistrements dans chaque tableur de données d'extension est illustré ci-dessous.
Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.
Versions
Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.
Comment citer
Les chercheurs doivent citer cette ressource comme suit:
Bianco C, Defez R (2023). Rhizobacteria promoting plant growth and bacteria degrading toxic pollutants (CNR-IBBR-SUB). Version 1.0. GBIF Secretariat. Occurrence dataset. - doi: https://doi.org/10.15468/bprp46
Droits
Les chercheurs doivent respecter la déclaration de droits suivante:
L’éditeur et détenteur des droits de cette ressource est Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR). Ce travail est sous licence Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0.
Enregistrement GBIF
Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : 2aeae1a6-4478-4577-8519-e3898ef1bf12. Consiglio Nazionale delle Ricerche, Istituto di Bioscienze e BioRisorse (CNR-IBBR) publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du DiSSCo.
Mots-clé
Occurrence; Genomics; proteomics; metabolomics; bacteria; rhizobacteria; Specimen
Données externes
Les données de la ressource sont disponibles dans d'autres formats
| API-JSON | https://biomemory.cnr.it/api/occurrences/json/?dataset=108 UTF-8 DwC |
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Contacts
- Personne De Contact
- Researcher
- v. Pietro Castellino 111
https://orcid.org/0000-0002-8489-3779
- Créateur
- Researcher
- v. Pietro Castellino 111
- Fournisseur Des Métadonnées
- Senior Researcher
- v. Madonna del Piano 10
- Personne De Contact
- Reference Person
- v. Pietro Castellino 111
- Propriétaire
- Research Institute
- v. Piero Castellino 111
Couverture géographique
Italy, Europe and Mali, Western-Central Africa
| Enveloppe géographique | Sud Ouest [13,083, -8], Nord Est [46,559, 14,062] |
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Couverture taxonomique
The following families are represented: Enterobacterales, Sphingobacteriales, Pseudomonadales, Flavobacteriales, Xanthomonadales, Actinomycetales.
| Kingdom | Bacteria |
|---|---|
| Phylum | Firmicutes, Bacteroidota, Proteobacteria, Actinobacteriota |
| Class | Actinomycetia, Bacilli, Gammaproteobacteria, Bacteroidia |
| Order | Paenibacillales, Sphingobacteriales, Actinomycetales, Xanthomonadales, Pseudomonadales, Exiguobacterales, Flavobacteriales, Bacillales, Enterobacterales, Burkholderiales |
| Family | Micrococcaceae, Sphingobacteriaceae, Xanthomonadaceae, Paenibacillaceae, Weeksellaceae, Exiguobacteraceae, Aeromonadaceae, Bacillaceae, Shewanellaceae, Microbacteriaceae, Burkholderiaceae, Pseudomonadaceae, Enterobacteriaceae, Moraxellaceae |
Couverture temporelle
| Epoque de formation | 2013-2016 |
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Données sur le projet
ITINERIS (PNRR Project IR0000032) Activity 6.5 "Mining and mapping the functional biodiversity in vivo and ex-situ research collections" - This activity is aimed to provide biodiversity (meta)data linked to Natural Science Collections (NSC). Extended digital specimens will be linked to related information (e.g.. images and videos, codification of functional traits, DNA and protein sequences, environmental parameters, etc.) in the frame of a national network of biological research collections, including all the existing in vivo and ex-situ collections of biological organisms (animals, plants, fungi, algae, archaea, bacteria, viruses, etc.) which have been created and maintained through past and current research projects. Reference to genetic/genomic data for each specimen will allow for the identification of the most interesting material for further genetic/genomic analysis. BioMemory (CNR-DiSBA Project No. SAC.AD002.173) is the network of biological collections of the Department of Biology, Agriculture and Food Sciences (DiSBA) of the National Research Council of Italy (CNR) for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and human well-being. The project is aimed to create a network of biobanks (i.e., scientific research collections) where data and metadata associated to biological samples of different nature are collected and stored in a systematic and well-organized way. Maintaining the existing collections will allow their future use for a number of purposes, from the genetic improvement of organisms to face environmental changes (climate-ready organisms) to the fight against epidemics and pandemics affecting humans, animals and plants.
| Titre | ITINERIS - Italian Integrated Environmental Research Infrastructures System | BIOMEMORY |
|---|---|
| Identifiant | PNRR Project IR0000032 | CNR SAC.AD002.173 |
| Financement | ITINERIS project no. IR0000032 — ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realisation of an integrated system of research and innovation infrastructures” || BioMemory (CNR-DiSBA Project No. SAC.AD002.173) - CNR-DiSBA - Department of Bio-Agrofood Sciences, National Research Council of Italy |
| Project Award |
BioMemory Project (CNR-DiSBA) https://doi.org/10.13039/501100004462 Consiglio Nazionale delle Ricerche CNR-DiSBA no. SAC.AD002.173 https://www.disba.cnr.it/en/ ITINERIS - Italian Integrated Environmental Research Infrastructures System https://doi.org/10.13039/501100004462 Ministero dell'Università e della Ricerca PNRR Project IR0000032 https://itineris.cnr.it/ |
| Related Projects |
MICRO4Legumes (“Il microbioma vegetale simbionte come strumento per il miglioramento delle leguminose foraggere”), D.M.n.89267 (Italian Ministry of Agriculture) D.M.n.89267 COST Action CA18111 "Genome Editing in Plants - A Technology with Transformative Potential" (PlantEd) CA18111 European Commission - ABSTRESS project (FP7 KBBE-2011-289562) FP7 KBBE-2011-289562 |
Les personnes impliquées dans le projet:
Données de collection
| Nom de la collection | Rhizobacteria promoting plant growth and bacteria degrading toxic pollutants (CNR-IBBR-SUB) |
|---|---|
| Identifiant de collection | bf6ef975-8cde-47ea-9037-9ca01d8d61ea |
| Méthode de conservation des spécimens | Deep frozen, Glycerin |
|---|
Citations bibliographiques
- Bianco C, Andreozzi A, Romano S, Fagorzi C, Cangioli L, Prieto P, Cisse F, Niangado O, Sidibé A, Pianezze S, et al. (2021). Endophytes from African Rice (Oryza glaberrima L.) efficiently colonize Asian Rice (Oryza sativa L.) stimulating the activity of its antioxidant enzymes and increasing the content of nitrogen, carbon, and chlorophyll. Microorganisms 9, 1714. https://doi.org/10.3390/microorganisms9081714
- The overproduction of indole-3-acetic acid (IAA) in endophytes up-regulates nitrogen-fixation in both bacterial cultures and inoculated rice plants. Microbial Ecology, 74, 441-452. https://doi.org/10.1007/s00248-017-0948-4
- Bianco C, Defez R (2015). Microorganisms and their use for environmental cleanup. Patent no. RM2015A00096, National Research Council of Italy, Rome, Italy. http://www.cnr.it/ontology/cnr/individuo/prodotto/ID326828
Métadonnées additionnelles
| Acknowledgements | PNRR Project IR0000032—ITINERIS, Italian Integrated Environmental Research Infrastructures System—CUP B53C22002150006 (D.D. n. 130/2022) Funded by the EU—Next Generation EU—Mission 4 “Education and Research”—Component 2: “From research to business”—Investment 3.1: “Fund for the realization of an integrated system of research and innovation infrastructures” CNR-DiSBA Project No. SAC.AD002.173 BioMemory - Network of scientific collections for bio-monitoring, biodiversity conservation, agri-food and environmental sustainability, and well-being. |
|---|---|
| Objet | Microbiology; genomics; metabolomics. Microbiology: growth and manipulation of bacteria. Molecular Biology: isolation and manipulation of nucleic acids; cloning and heterologous expression of genes of interest in model organisms (E. coli); gene expression analysis (RT-PCR, RNA-seq). Biochemistry: structural and functional analysis of proteins by SDS-PAGE, native-PAGE and western blot; UV-visible, fluorescent and circular dichroism spectroscopy; enzymatic assays (varius enzymes inclucing DNA polymerases); in vitro DNA-ligand interaction techniques by innovative techniques, as the Surface Plasmon Resonance (SPR) and Bio-Layer Interferometry (BLI); fluorescence microscopy for in vivo study of bacteria, nematodes, and plants. |
| Description de la fréquence de mise à jour | Microorganisms are cryopreserved at temperatures below freezing (-80 °C). To prevent damage to cells caused by ice crystal formation, cells are resuspended in growth media containing cryoprotectants such as glycerol prior to storage at -80 °C. Frozen microorganisms can be revived by thawing at 37 °C and inoculating into fresh culture medium. |
| Identifiants alternatifs | 2aeae1a6-4478-4577-8519-e3898ef1bf12 |
| https://ipt.ibbr.cnr.it/ipt/resource?r=cnr-ibbr-sub |